jeffreypullin Goto Github PK

bernadette

Bayesian analysis of infectious disease transmission dynamics, with a particular focus on Coronavirus Disease 2019 (COVID-19)

blinded

Blindly rate a series of images in R

cacher

Simple and intuitive caching for R

cardelino

Clone identification from single-cell data

coloc

Repo for the R package coloc

contributing

Contributing to GNU R

cpp-notes

Notes I created while learning C++

cytoffunctions

Various helpful functions for analysing CyTOF data

cytofscripts

Scripts for analysing CyTOF data

cytofsimulation

Scripts for simulating CyTOF data

dirtree-elections

An R package for performing bayesian audits on ranked-choice elections with a Dirichlet-Tree prior distribution.

docs

Online documentation for Stan language and platform

dotfiles

My dotfiles!

dplyr

dplyr: A grammar of data manipulation

eda

Data exploration to determine how much of variability in total UMIs is biologically drive

efficiency-of-marginalising-over-discrete-latent-parameters

fishflux

A package to model elemental fluxes in fish

gastempt

A package and a Shiny web application to create simulated gastric emptying data, and to analyze experimental gastric emptying data using population fit with R and package nlme. Use the Docker image (https://hub.docker.com/u/dmenne) for easy installation. Documentation:

glmgampoi

Fit Gamma-Poisson Generalized Linear Models Reliably

greta

simple and scalable statistical modelling in R

isee

R/shiny interface for interactive visualization of data in objects derived from the SummarizedExperiment class

jags

juliacall

Embed Julia in R

mlir

"Multi-Level Intermediate Representation" Compiler Infrastructure

moloc

mycytof

Functions and scripts for analysing and normalising CyTOF data

nodegraph

Infrastructure of node-based lazy matrix computation

pd1_reanalysis

ppcseq

Posterior predictive check for bulk RNA sequencing differential abundance analyses

presto

Fast Wilcoxon and auROC