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bioconda-recipes

Conda recipes for the bioconda channel.

chopper

A tool for partitioning a set of sequences into similar batches.

curl

A command line tool and library for transferring data with URL syntax, supporting DICT, FILE, FTP, FTPS, GOPHER, GOPHERS, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, MQTT, POP3, POP3S, RTMP, RTMPS, RTSP, SCP, SFTP, SMB, SMBS, SMTP, SMTPS, TELNET and TFTP. libcurl offers a myriad of powerful features

deepnano-blitz

Very fast ONT basecaller

dl-plasmid-classifier

Master Thesis on Deep Learning-Based Plasmid Classification

ganon

a read classification tool based on Interleaved Bloom Filters

hdf5

Official HDF5® Library Repository

libzmq

ZeroMQ core engine in C++, implements ZMTP/3.1

minhashtutorial

ont_minimap2

openssl-cmake

Build OpenSSL with CMake on MacOS, Win32, Win64 and cross compile for Android, IOS

phylodeep

PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

phylogeo_epi_cnn

plasmidenrichmentscripts

Scripts to reproduce results from in-silico plasmid enrichment study

raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

readbouncer

Fast and scalable nanopore adaptive sampling

retreat2024

self-attention-with-functional-time-representation-learning

seqan

SeqAn's official repository.

seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

taxor

Fast and space-efficient taxonomic classification of long reads