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big_dreams

cdc_multicountry_trachoma_seroproject

Code for Gwyn, S., Awoussi, M.S., Bakhtiari, A. et al. Comparison of platforms for testing antibodies to Chlamydia trachomatis antigens in the Democratic Republic of the Congo and Togo. Sci Rep 11, 7225 (2021). https://doi.org/10.1038/s41598-021-86639-8

covid-19-data

Data on COVID-19 maintained by Our World in Data

covid_19jr

analysis and visualization of COVID 19 data from various sources

cv

My CV built using RMarkdown and the pagedown package.

dcb_20200601

Initial exploratory descriptive analysis of tweets from the #dcblackout Twitter campaign which spread images and text stating that protesters in DC had experienced a blackout of cellular service on June 01 2020 between the hours of 1:00-6:00

epimodel

Mathematical Modeling of Infectious Disease Dynamics

epimodel_practice

snippets of code practicing with the EpiModel package see here: http://www.epimodel.org/index.html and full citation here Jenness SM, Goodreau SM and Morris M. EpiModel: An R Package for Mathematical Modeling of Infectious Disease over Networks. Journal of Statistical Software. 2018; 84(8): 1-47. doi: 10.18637/jss.v084.i08

fitviz

Playing with data from the Fitbit API

groundhog_day

Quarterly data review for the office

hrdagblog_jr

Project code related to the HRDAG blog post From Scripts to Projects: Learning a Modular, Auditable, and Reproducible Workflow

hrw_pollingplaces

Analysis related to this project with HRW "What Democracy Looks Like Protecting Voting Rights in the US during the Covid-19 Pandemic" https://www.hrw.org/report/2020/09/22/what-democracy-looks/protecting-voting-rights-us-during-covid-19-pandemic

ibs574spring2020

Course Materials for IBS 574 Spring 2020

jblog

source code for my blog!

machine_learning_demos

This repository contains R Markdown reports documenting updates of my homework assignments from my Machine Learning class at Emory University's Rollins School of Public Health in Spring 2019. The course was taught in Python and was originally submitted as a Jupyter Notebook. Since graduating I have learned and used R for data science projects much more frequently so I decided to go back and re-do my assignments.

methods

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

muffin-cupcake

classifying muffin and cupcake recipes using support vector machines

seclists

SecLists is the security tester's companion. It's a collection of multiple types of lists used during security assessments, collected in one place. List types include usernames, passwords, URLs, sensitive data patterns, fuzzing payloads, web shells, and many more.

serology_code-

Serology code

shiny_slides

This is a repository designed to demonstrate how to use an R Shiny application to preview and generate MS Powerpoint slides.

ssu11755

Project files for the Differential Expression Analysis of RNASeq data for Weiping Cao

stats_stories

Exploration of data from the "Stats + Stories" podcast

tidy_modeling

Explorations of modeling using tidyverse tools

togo-2017

This folder contains all analyses for my Master's thesis

training-docs

materials to study and learn about principled data processing