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Jeff's Projects

arcashla icon arcashla

Fast and accurate in silico inference of HLA genotypes from RNA-seq

awesome-datascience icon awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

awesome-deepbio icon awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

awesome-single-cell icon awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bdshack19 icon bdshack19

Coordinating the 2019 Biomedical Data Science Hackathon at UVA

bokeh icon bokeh

Interactive Web Plotting for Python

book-notes icon book-notes

Notes from books and other interesting things that I've read.

classroomnotes icon classroomnotes

Notes on academic advice and helpful tools to use in the classroom

cmri icon cmri

viewing cardiac MRI sequence in a healthy volunteer

covid-19 icon covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

crossmap icon crossmap

CrossMap is a python program to lift over genome coordinates from one genome version to another.

gatk icon gatk

Official code repository for GATK versions 4 and up

gdown.pl icon gdown.pl

Google Drive direct download of big files

labs icon labs

Rmd source files for the HarvardX series PH525x

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