Name: James A. Fellows Yates
Type: User
Company: HKI Jena, MPI-EVA Leipzig
Bio: Bioinformatician with specialism in ancient DNA and metagenomics. nf-core core-team member and SPAAM community founder. @[email protected]
Twitter: jfy133
Location: Leipzig, Germany
Blog: jafy.eu
🤖 I like automation, metadata, documentation and community projects!
🧬 My current research focus is currently on improving throughput of NGS sequencing data processing, and authentication of very old metagenomic ancient DNA samples.
👪 I'm currently a core-team member of the nf-core initative of standardised Nextflow pipelines and I established the SPAAM-community of ancient metagenomics researchers.
acad-workshop-2024
Command's from Mikkel's github sessiopn at ACAD aeDNA workshop
academics-on-mastodon
A list of various lists consisting of academics on Mastodon
adrsm
Ancient DNA Read Simulator for Metagenomic
amps
Postprocessing script for MALTextract.
ancientmetagenomedir
Repository containing lists of all published ancient metagenome samples (and related)
aom-add-user
Simple form to let users for the „Academics on Mastodon“ lists generate their csv entries and send them via E-mail
archaeodiet
[Under constrution] Pipeline for metagenomic identification and authentication of ancient dietary DNA from archaeological samples
askimed-nf-test
Simple test framework for Nextflow pipelines
bingo
Bingo web app (work in progress)
bioconda-recipes
Conda recipes for the bioconda channel.
bioinformatics-cafe
Unsorted scripts for bioinformatics
collapse_fastas
Small bash script to convert multiple (multi-)FASTAs into single file with single header
configbuilder-nf
Nextflow config builder scripts for supported HPC infrastructures.
coproid
Coprolite host Identification
cuperdec
R library to generate 'Cumulative Percent Decay' curves for microbial taxonomic profiles
dag-material
damageprofiler
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
dedup
A merged read deduplication tool capable to perform merged read deduplication on single end data.
dotfiles
Personal dotfiles
eager1-tips-and-tricks
EAGER1 Tips and Tricks
eager2-paper
eagerutils
Unofficial collection of utility scripts for the EAGER v1.9.* genome reconstruction pipeline
effective-doodle
endors.py
endorS.py calculates endogenous DNA from samtools flagstat files and print to screen
gargammel
gargammel is an ancient DNA simulator
genomics-standards-consortium-mixs
Minimum Information about any (X) Sequence” (MIxS) specification
hominid_calculus_microbiome_evolution
Additional supplementary information and code, data repository for Fellows Yates, J.A. et al. (2021) PNAS. DOI: http://dx.doi.org/10.1073/pnas.2021655118
hops
jbv2-run_smartpca
jfy133
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
