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agile_data_tools

An evolution of some python scripts developed to import data into various database system

agile_healthcare_tools

Some scripts for making it easier to work with health care data

brandgenericdrugidentification

Machine learning for identification of brand and generic names

broadsea-webtools

A Docker container that includes the OHDSI WebAPI (running in Apache Tomcat) and the OHDSI web applications.

cardiovascularriskcalculator

Cardiovascular Risk Calculator

censusgeographytools

A set of tools for working with the summary files from the US Census

commandweaver

Run custom Python script in complex environments for data pipeline

commondatamodelmapper

Utility functions and classes for mapping code to a common data model

convertunitharmonization2dqd

Convert upper and lower limits from unit harmonization for OHDSI DQD

cureidregistry

dataextracttransformscore

A pipeline for extracting and transforming data

dataqualitydashboard

A tool to help improve data quality standards in observational data science.

desynpufanalysis

Working with public De-SYNPUF files from CMS

docgraph

Code related to DocGraph analysis

dockers4healthcaredb2hdf52ml

Set of of dockers for building HDF5 for machine learning from health care data stored in the OHDSI DB

excelblackbox

Code for treating an Excel Spreadsheet as function which takes input and produces an ouput. The code requires that you have Excel installed on MS Windows machine with Python and the win32 library.

gridfs-document-transformer-tools

Automatically exported from code.google.com/p/gridfs-document-transformer-tools

health-open-data-workshop

Materials and reproducible workflows for working with health care data

healthcareanalytictools

A repository for integrating and analyzing public data sources for healthcare in the United States.

i2b2topreparedsource

Convert i2b2 to prepared source format which is used by the CommonDataModelMapper to map to OHDSI

lstmseq2ml

Code for learning how to train a LSTM

medicareprescriberanalysis

An analysis of the files released by ProPublica for the Prescriber Data

memorybox

A program for tracking transactions for a fixed period

myrnaseqscripts

Some scripts for working with RNA Seq pipelines

ny_sparcs_import

Scripts for importing SPARCS into the database

parsinghealthkitexport

Notebooks and analysis for extracting out your data from Apple HealthKit export

preparedsource2ohdsi

Spark based mapper for converting EHR data to OHDSI

provinggroundsohdsinlp

Demonstrating how to use the OHDSI NLP tables, OHNLP, and other NLP tools

py-triple-simple

Automatically exported from code.google.com/p/py-triple-simple

rnaseqcuisine

A Cuisine recipe for the RNASeq Pipeline on Ubuntu LTS 12.04 server