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annofuse

Filter and prioritize fusion calls

atac

atsnp

Large-scale testing for SNP-motif interactions.

bamtools

C++ API & command-line toolkit for working with BAM data

bard1-wgs

Whole genome sequencing (WGS) analysis for neuroblastoma IMR-5 cell lines carrying rare, pathogenic BARD1 variants introduced by CRISPR

bioinfo

Various bioinformatics tools

chip-seq

csl-styles

Repository of CSL citation styles.

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

digital-pcr

disambiguate

Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem

drive-template

PI drive cookiecutter template

ea-utils

Automatically exported from code.google.com/p/ea-utils

ez

Development repository for the `ez` package for R

fastq-tools

Small utilities for working with fastq sequence files.

gbic

R packages developed by Groningen BioInformatics Centre

handbook

📖 Technical best practices in D3b

illumina-utils

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

jharenza.github.io

light-dark-box-analysis

R script for analyzing behavioral data from MedAssociates Light-Dark chambers.

maftools

:cancer: Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

mageri-paper

Data and post-analysis for MAGERI project

misc

miscellaneous scripts

mnp_training

DNA methylation-based classification of central nervous system tumours

nbl-cell-line-rna-seq

ngs-filters

Filters for false-positive mutation calls in NGS

nucleoatac

nucleosome calling using ATAC-seq

oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

openpbta-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project

openpbta-manuscript

The manuscript repository for the Open Pediatric Brain Tumor Atlas Project