jharman25 Goto Github PK
Name: Joseph Harman
Type: User
Bio: Protein design & engineering at Monod Bio | Formerly IPD postdoc (Baker lab) and U. Oregon PhD (Harms lab)
Twitter: jharman25
Location: Seattle, WA
Joseph Harman's Projects
ama-parser
Takes 96-well plate reader data, converts to pandas dataframe, and allows for analysis/plotting of bacterial growth curves
ambigauss
Generic multi-peak fitter in Python
augur
Pipeline components for real-time phylodynamic analysis
bioimage_quant
Simple image quantification software. Currently implemented for SDS-PAGE gels, western blots, and yeast spotting assays.
deeplabcut
Markerless tracking of user-defined features with deep learning
enspara
Modeling molecular ensembles with scalable data structures and parallel computing
guide-to-working-as-team-on-github
A quick guide to working as a team on Github
herbivory-defense-simulation
A computational approach to model the evolution of herbivory defense compounds in plants.
jharman25.github.io
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
mapbox-gl-js
Interactive, thoroughly customizable maps in the browser, powered by vector tiles and WebGL
phylo_tools
python tools for phylogenetic inference
phylogenetics
A Python API for managing phylogenetics projects
phylopandas
Pandas DataFrames for phylogenetics
phylovega
Visualize phylogenetic trees in Vega from Python
physical-biochemistry
course material for physical biochemistry class taught at the University of Oregon
pida
Software for analyzing multiple protein-protein interaction docking solutions, calculating contact regions using mdtraj, and visualizing in useful ways via nglview.
pyasr
Ancestral Sequence Reconstruction in Python
pytc
python program for analyzing isothermal titration calorimetry data
pytc-demos
Set of jupyter notebooks illustrating the pytc API.
python-for-scientists
The easy way to set up Python for a scientist.
python_for_scientists
Python Open Courseware for Scientists and Engineers
pythondatasciencehandbook
Jupyter Notebooks for the Python Data Science Handbook
pythonic-science
Materials for Scientific Programming in Python Course at the UO
restaurant-visitors
Solution to the Kaggle restaurant visitor forecasting
reveal-presentation-template
html and basic directory structure template for (relatively) easily creating reveal.js slideshows
whirlwindtourofpython
The Jupyter Notebooks behind my OReilly report, "A Whirlwind Tour of Python"
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