jiarong Goto Github PK

2014-ssu-search

2015-01-27-msu_icer

Software Carpentry Bootcamp held at Michigan State University on January 27th to 29th, 2015

2015-08-20-msu

2015-09-28-icpsr

2015-11-05-nd

2015-glbrc

2016-dissertation

2016-rplb

2021-08-viral-identification-benchmark-review

atlas

ATLAS - Three commands to start analysing your metagenome data

aviary

A hybrid assembly and MAG recovery pipeline (and more!)

bioconda-recipes

Conda recipes for the bioconda channel.

blog

my blog posts

emirge

EMIRGE reconstructs full length ribosomal genes from short read sequencing data.

gtdb-taxon-mapping-between-versions

jiarong-helloworld

kbase tutorial

khmer

in-memory k-mer counting

metapop

A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations

molevolworkshop.github.io

Future web site for the Workshop on Molecular Evolution, Marine Biological Laboratory, Woods Hole, Massachusetts.

mycontigfilter

mycontigfilter_gjr

pelicangit

A python script to build your pelican powered blog in response to HTTP git service hook

planets_icpsr

git lesson for icpsr workshop

protocols

NGS data analysis protocols

r-genomics

rplb-metag-pipeline

rplB/rpsC targeted analyses with shotgun metagenomes

sampleproject

A sample project that exists for PyPUG's "Tutorial on Packaging and Distributing Projects"

sat-assembler

A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Data)

screed

a simple read-only sequence database, designed for short reads

seqdep

a tool for estimating sequencing depth of shotgun sequences