GithubHelp home page GithubHelp logo

Hello, welcome!

My repositories at workplace can be accessed from cambridge-ceu.

@examples.svg
<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.5.2/css/all.min.css" type="text/css"?>
<svg aria-roledescription="flowchart-v2" role="graphics-document document" viewBox="-8 -8 924.6624755859375 233" style="max-width: 100%;" xmlns="http://www.w3.org/2000/svg" width="100%" id="graph-div" height="100%" xmlns:xlink="http://www.w3.org/1999/xlink"><style>#graph-div{font-family:"trebuchet ms",verdana,arial,sans-serif;font-size:16px;fill:#333;}#graph-div .error-icon{fill:#552222;}#graph-div .error-text{fill:#552222;stroke:#552222;}#graph-div .edge-thickness-normal{stroke-width:2px;}#graph-div .edge-thickness-thick{stroke-width:3.5px;}#graph-div .edge-pattern-solid{stroke-dasharray:0;}#graph-div .edge-pattern-dashed{stroke-dasharray:3;}#graph-div .edge-pattern-dotted{stroke-dasharray:2;}#graph-div .marker{fill:#333333;stroke:#333333;}#graph-div .marker.cross{stroke:#333333;}#graph-div svg{font-family:"trebuchet ms",verdana,arial,sans-serif;font-size:16px;}#graph-div .label{font-family:"trebuchet ms",verdana,arial,sans-serif;color:#333;}#graph-div .cluster-label text{fill:#333;}#graph-div .cluster-label span,#graph-div p{color:#333;}#graph-div .label text,#graph-div span,#graph-div p{fill:#333;color:#333;}#graph-div .node rect,#graph-div .node circle,#graph-div .node ellipse,#graph-div .node polygon,#graph-div .node path{fill:#ECECFF;stroke:#9370DB;stroke-width:1px;}#graph-div .flowchart-label text{text-anchor:middle;}#graph-div .node .katex path{fill:#000;stroke:#000;stroke-width:1px;}#graph-div .node .label{text-align:center;}#graph-div .node.clickable{cursor:pointer;}#graph-div .arrowheadPath{fill:#333333;}#graph-div .edgePath .path{stroke:#333333;stroke-width:2.0px;}#graph-div .flowchart-link{stroke:#333333;fill:none;}#graph-div .edgeLabel{background-color:#e8e8e8;text-align:center;}#graph-div .edgeLabel rect{opacity:0.5;background-color:#e8e8e8;fill:#e8e8e8;}#graph-div .labelBkg{background-color:rgba(232, 232, 232, 0.5);}#graph-div .cluster rect{fill:#ffffde;stroke:#aaaa33;stroke-width:1px;}#graph-div .cluster text{fill:#333;}#graph-div .cluster span,#graph-div p{color:#333;}#graph-div div.mermaidTooltip{position:absolute;text-align:center;max-width:200px;padding:2px;font-family:"trebuchet ms",verdana,arial,sans-serif;font-size:12px;background:hsl(80, 100%, 96.2745098039%);border:1px solid #aaaa33;border-radius:2px;pointer-events:none;z-index:100;}#graph-div .flowchartTitleText{text-anchor:middle;font-size:18px;fill:#333;}#graph-div :root{--mermaid-font-family:"trebuchet ms",verdana,arial,sans-serif;}</style><g><marker orient="auto" markerHeight="12" markerWidth="12" markerUnits="userSpaceOnUse" refY="5" refX="6" viewBox="0 0 10 10" class="marker flowchart" id="graph-div_flowchart-pointEnd"><path style="stroke-width: 1px; stroke-dasharray: 1px, 0px;" class="arrowMarkerPath" d="M 0 0 L 10 5 L 0 10 z"></path></marker><marker orient="auto" markerHeight="12" markerWidth="12" markerUnits="userSpaceOnUse" refY="5" refX="4.5" viewBox="0 0 10 10" class="marker flowchart" id="graph-div_flowchart-pointStart"><path style="stroke-width: 1px; stroke-dasharray: 1px, 0px;" class="arrowMarkerPath" d="M 0 5 L 10 10 L 10 0 z"></path></marker><marker orient="auto" markerHeight="11" markerWidth="11" markerUnits="userSpaceOnUse" refY="5" refX="11" viewBox="0 0 10 10" class="marker flowchart" id="graph-div_flowchart-circleEnd"><circle style="stroke-width: 1px; stroke-dasharray: 1px, 0px;" class="arrowMarkerPath" r="5" cy="5" cx="5"></circle></marker><marker orient="auto" markerHeight="11" markerWidth="11" markerUnits="userSpaceOnUse" refY="5" refX="-1" viewBox="0 0 10 10" class="marker flowchart" id="graph-div_flowchart-circleStart"><circle style="stroke-width: 1px; stroke-dasharray: 1px, 0px;" class="arrowMarkerPath" r="5" cy="5" cx="5"></circle></marker><marker orient="auto" markerHeight="11" markerWidth="11" markerUnits="userSpaceOnUse" refY="5.2" refX="12" viewBox="0 0 11 11" class="marker cross flowchart" id="graph-div_flowchart-crossEnd"><path style="stroke-width: 2px; stroke-dasharray: 1px, 0px;" class="arrowMarkerPath" d="M 1,1 l 9,9 M 10,1 l -9,9"></path></marker><marker orient="auto" markerHeight="11" markerWidth="11" markerUnits="userSpaceOnUse" refY="5.2" refX="-1" viewBox="0 0 11 11" class="marker cross flowchart" id="graph-div_flowchart-crossStart"><path style="stroke-width: 2px; stroke-dasharray: 1px, 0px;" class="arrowMarkerPath" d="M 1,1 l 9,9 M 10,1 l -9,9"></path></marker><g class="root"><g class="clusters"></g><g class="edgePaths"><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-cambridge_ceu LE-internals" id="L-cambridge_ceu-internals-0" d="M656.029,25.063L585.301,31.553C514.574,38.042,373.118,51.021,302.39,60.794C231.662,70.567,231.662,77.133,231.662,80.417L231.662,83.7"></path><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-cambridge_ceu LE-externals" id="L-cambridge_ceu-externals-0" d="M656.029,28.6L616.718,34.5C577.407,40.4,498.785,52.2,459.474,61.383C420.162,70.567,420.162,77.133,420.162,80.417L420.162,83.7"></path><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-cambridge_ceu LE-blog" id="L-cambridge_ceu-blog-0" d="M656.029,31.877L629.801,37.231C603.574,42.585,551.118,53.292,530.521,62.929C509.923,72.566,521.184,81.131,526.814,85.414L532.444,89.697"></path><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-internals LE-journal_club" id="L-internals-journal_club-0" d="M159.662,127.165L143.052,131.47C126.442,135.776,93.221,144.388,76.61,151.977C60,159.567,60,166.133,60,169.417L60,172.7"></path><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-internals LE-scientific_meetings" id="L-internals-scientific_meetings-0" d="M241.232,128L243.276,132.167C245.321,136.333,249.411,144.667,251.455,152.117C253.5,159.567,253.5,166.133,253.5,169.417L253.5,172.7"></path><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-internals LE-journal_dot" id="L-internals-journal_dot-0" d="M303.662,127.165L320.273,131.47C336.883,135.776,370.104,144.388,386.715,151.977C403.325,159.567,403.325,166.133,403.325,169.417L403.325,172.7"></path><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-internals LE-github_matters" id="L-internals-github_matters-0" d="M303.662,119.38L340.744,124.983C377.825,130.587,451.987,141.793,489.069,150.68C526.15,159.567,526.15,166.133,526.15,169.417L526.15,172.7"></path><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-internals LE-csd3" id="L-internals-csd3-0" d="M303.662,116.057L362.327,122.214C420.992,128.371,538.321,140.686,596.985,150.126C655.65,159.567,655.65,166.133,655.65,169.417L655.65,172.7"></path><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-cambridge_ceu LE-blog" id="L-cambridge_ceu-blog-1" d="M664.297,39L653.108,43.167C641.919,47.333,619.541,55.667,605.197,63.343C590.853,71.019,584.543,78.039,581.388,81.549L578.234,85.058"></path><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-cambridge_ceu LE-github" id="L-cambridge_ceu-github-0" d="M690.589,39L685.018,43.167C679.447,47.333,668.305,55.667,662.734,63.117C657.162,70.567,657.162,77.133,657.162,80.417L657.162,83.7"></path><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-cambridge_ceu LE-search" id="L-cambridge_ceu-search-0" d="M737.915,39L742.457,43.167C746.998,47.333,756.08,55.667,760.621,63.117C765.162,70.567,765.162,77.133,765.162,80.417L765.162,83.7"></path><path marker-end="url(#graph-div_flowchart-pointEnd)" style="fill:none;" class="edge-thickness-normal edge-pattern-solid flowchart-link LS-cambridge_ceu LE-contact" id="L-cambridge_ceu-contact-0" d="M777.296,36.417L793.774,41.014C810.251,45.611,843.207,54.806,859.685,62.686C876.162,70.567,876.162,77.133,876.162,80.417L876.162,83.7"></path></g><g class="edgeLabels"><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g><g class="edgeLabel"><g transform="translate(0, 0)" class="label"><foreignObject height="0" width="0"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="edgeLabel"></span></div></foreignObject></g></g></g><g class="nodes"><g transform="translate(716.6624984741211, 19.5)" data-id="cambridge_ceu" data-node="true" id="flowchart-cambridge_ceu-174" class="node default default flowchart-label"><rect height="39" width="121.26666259765625" y="-19.5" x="-60.633331298828125" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-53.133331298828125, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="106.26666259765625"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">cambridge-ceu</span></div></foreignObject></g></g><g transform="translate(231.6624984741211, 108.5)" data-id="internals" data-node="true" id="flowchart-internals-175" class="node default default flowchart-label"><rect height="39" width="144" y="-19.5" x="-72" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-64.5, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="129"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel"><a style="font-size: 25px;font-size:90%" href="https://cambridge-ceu.github.io/internal/">Internal repositories</a></span></div></foreignObject></g></g><g transform="translate(420.1624984741211, 108.5)" data-id="externals" data-node="true" id="flowchart-externals-177" class="node default default flowchart-label"><rect height="39" width="133" y="-19.5" x="-66.5" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-59, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="118"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel"><a style="font-size: 25px;font-size:90%" href="https://cambridge-ceu.github.io/public/">Public repositories</a></span></div></foreignObject></g></g><g transform="translate(557.1624984741211, 108.5)" data-id="blog" data-node="true" id="flowchart-blog-179" class="node default default flowchart-label"><rect height="39" width="41" y="-19.5" x="-20.5" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-13, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="26"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel"><a style="font-size: 25px;font-size:90%" href="https://cambridge-ceu.github.io/blog/">Blog</a></span></div></foreignObject></g></g><g transform="translate(60, 197.5)" data-id="journal_club" data-node="true" id="flowchart-journal_club-181" class="node default default flowchart-label"><rect height="39" width="120" y="-19.5" x="-60" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-52.5, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="105"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel"><a style="font-size: 25px;font-size:90%" href="https://cambridge-ceu.github.io/CEU-journal-club/">CEU-journal-club</a></span></div></foreignObject></g></g><g transform="translate(253.5, 197.5)" data-id="scientific_meetings" data-node="true" id="flowchart-scientific_meetings-183" class="node default default flowchart-label"><rect height="39" width="167" y="-19.5" x="-83.5" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-76, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="152"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel"><a style="font-size: 25px;font-size:90%" href="https://cambridge-ceu.github.io/CEU-scientific-meetings/">CEU-scientific-meetings</a></span></div></foreignObject></g></g><g transform="translate(403.3249969482422, 197.5)" data-id="journal_dot" data-node="true" id="flowchart-journal_dot-185" class="node default default flowchart-label"><rect height="39" width="32.649993896484375" y="-19.5" x="-16.324996948242188" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-8.824996948242188, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="17.649993896484375"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel">...</span></div></foreignObject></g></g><g transform="translate(526.1499938964844, 197.5)" data-id="github_matters" data-node="true" id="flowchart-github_matters-187" class="node default default flowchart-label"><rect height="39" width="113" y="-19.5" x="-56.5" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-49, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="98"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel"><a style="font-size: 25px;font-size:90%" href="https://cambridge-ceu.github.io/GitHub-matters/">GitHub-matters</a></span></div></foreignObject></g></g><g transform="translate(655.6499938964844, 197.5)" data-id="csd3" data-node="true" id="flowchart-csd3-189" class="node default default flowchart-label"><rect height="39" width="46" y="-19.5" x="-23" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-15.5, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="31"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel"><a style="font-size: 25px;font-size:90%" href="https://cambridge-ceu.github.io/csd3/">CSD3</a></span></div></foreignObject></g></g><g transform="translate(657.1624984741211, 108.5)" data-id="github" data-node="true" id="flowchart-github-193" class="node default default flowchart-label"><rect height="39" width="59" y="-19.5" x="-29.5" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-22, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="44"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel"><a style="font-size: 25px;font-size:90%" href="https://github.com/cambridge-ceu/">GitHub</a></span></div></foreignObject></g></g><g transform="translate(765.1624984741211, 108.5)" data-id="search" data-node="true" id="flowchart-search-195" class="node default default flowchart-label"><rect height="39" width="57" y="-19.5" x="-28.5" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-21, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="42"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel"><a style="font-size: 25px;font-size:90%" href="https://cambridge-ceu.github.io/search/">Search</a></span></div></foreignObject></g></g><g transform="translate(876.1624984741211, 108.5)" data-id="contact" data-node="true" id="flowchart-contact-197" class="node default default flowchart-label"><rect height="39" width="65" y="-19.5" x="-32.5" ry="0" rx="0" style="" class="basic label-container"></rect><g transform="translate(-25, -12)" style="" class="label"><rect></rect><foreignObject height="24" width="50"><div xmlns="http://www.w3.org/1999/xhtml" style="display: inline-block; white-space: nowrap;"><span class="nodeLabel"><a style="font-size: 25px;font-size:90%" href="https://cambridge-ceu.github.io/contact/">Contact</a></span></div></foreignObject></g></g></g></g></g></svg>
@example.svg

I currently work on proteogenomic analysis, whose generic features are collected for reproducible research.

The protein diagram is generated from Jumper, J., et al. (2021). Highly accurate protein structure prediction with AlphaFold. *Nature* **596**(7873): 583-589, (Suppl. video 4) with `ffmpeg` in a module.
module load ceuadmin/ffmpeg
ffmpeg -i jumper21s4.mp4 -ss 8 -t 8 s4.mp4
ffmpeg -i s4.mp4 -f gif s4.gif
ffprobe s4.gif
ffmpeg -i s4.gif -s 640x360 CASP14-t1091.gif
ffmpeg -i CASP14-t1091.gif -vf "drawtext=fontsize=20:text='CASP14-t1091':fontcolor=red:x=25:y=30" CASP14-t1091-text.gif

More information is available from "Critical Assessment of protein Structure Prediction (CASP)", https://predictioncenter.org/casp14/

See also Lin, Z., et al. (2023). Evolutionary-scale prediction of atomic-level protein structure with a language model. Science (New York, N.Y.) 379(6637): 1123-1130, https://doi.org/10.1126/science.ade2574.

The sunflower figure is from CCTV4 covering Baiyin, Gansu province, China.

Jing Hua Zhao's Projects

dsa icon dsa

Data Structures and Algorithms

ewas-fusion icon ewas-fusion

Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)

gdct icon gdct

Genetics Dissection of Complex Traits

hermes icon hermes

https://jinghuazhao.github.io/HERMES

inf icon inf

SCALLOP-INF analysis

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.