Cannot export citations in org-ref.org to LaTeX about org-ref

[jkitchin]

I can confirm that is an issue. It is easy to fix. You need to add a bibliographystyle, otherwise LaTeX/bibtex can't format the bibiliography.

• References
  bibliographystyle:unsrtnat

  <>

  bibliography:org-ref.bib

[jkitchin]

Could you share your el-get recipe?

[Spauldo]

That did the trick, thanks! If you could put a note about it in the documentation, that would help people like me who are new to all this.

I only use the default el-get recipe. It is as follows:

(:name org-ref
:website "https://github.com/jkitchin/org-ref"
:description "org-mode modules for citations, cross-references, bibliographies in org-mode and useful bibtex tools to go with it."
:type github
:pkgname "jkitchin/org-ref"
:depends (dash helm helm-bibtex hydra key-chord))

[jkitchin]

Thanks, I think I have added that and pushed it to that document.

[nayakprakash]

The doi Utils and pdf auto citations don't work well on Windows install of Emacs 24.5.
Must one add the follwing to .emacs file?

(require 'org-ref)
;; (require 'org-ref-pdf)
;; (require 'org-ref-autoloads)
;; (require 'org-ref-bibtex)
;; (require 'org-ref-pubmed)
;; (require 'org-ref-glossary)
;; (require 'org-ref-isbn)
;; (require 'org-ref-latex)
;; (require 'org-ref-scopus)
;; (require 'org-ref-pkg)
;; (require 'org-ref-scifinder)
;; (require 'org-ref-sci-id)
;; (require 'org-ref-url-utils)
;; (require 'org-ref-wos)
;; (require 'x2bib)
;; (require 'doi-utils)
;; (require 'org-ref-arxiv)

I have commented out the section below Org-ref as it throws a ''do not call error'' on loading Emacs.

I am a Emacs newbie and would appreciate any help!

Thank you for the extremely useful package.

[jkitchin]

I think the issue is (require 'org-ref-autoloads), which usually should not
be required. Also (require 'org-ref-pkg) should not be required. everything
else should be fine.

What doesn't work?

John

---

Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

On Mon, Feb 8, 2016 at 3:06 PM, Prakash Nayak [email protected]
wrote:

The doi Utils and pdf auto citations don't work well on Windows install of
Emacs 24.5.
Must one add the follwing to .emacs file?

(require 'org-ref)
;; (require 'org-ref-pdf)
;; (require 'org-ref-autoloads)
;; (require 'org-ref-bibtex)
;; (require 'org-ref-pubmed)
;; (require 'org-ref-glossary)
;; (require 'org-ref-isbn)
;; (require 'org-ref-latex)
;; (require 'org-ref-scopus)
;; (require 'org-ref-pkg)
;; (require 'org-ref-scifinder)
;; (require 'org-ref-sci-id)
;; (require 'org-ref-url-utils)
;; (require 'org-ref-wos)
;; (require 'x2bib)
;; (require 'doi-utils)
;; (require 'org-ref-arxiv)

I have commented out the section below Org-ref as it throws a ''do not
call error'' on loading Emacs.

I am a Emacs newbie and would appreciate any help!

Thank you for the extremely useful package.

—
Reply to this email directly or view it on GitHub
#58 (comment).

[nayakprakash]

The bibtex buffer does not process the doi paste. It throws a wrong
argument error. (may be because I have commented out doi-utils?)

Also, is there a way to link existing pdfs to their bibtex entries? The
open pdf link in helm seems to work only when a pdf is dropped into the
bibtex buffer.

Thank you again.

Prakash Nayak
On 8 Feb 2016 16:18, "John Kitchin" [email protected] wrote:

I think the issue is (require 'org-ref-autoloads), which usually should not
be required. Also (require 'org-ref-pkg) should not be required. everything
else should be fine.

What doesn't work?

John

---

Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

On Mon, Feb 8, 2016 at 3:06 PM, Prakash Nayak [email protected]
wrote:

The doi Utils and pdf auto citations don't work well on Windows install
of
Emacs 24.5.
Must one add the follwing to .emacs file?

(require 'org-ref)
;; (require 'org-ref-pdf)
;; (require 'org-ref-autoloads)
;; (require 'org-ref-bibtex)
;; (require 'org-ref-pubmed)
;; (require 'org-ref-glossary)
;; (require 'org-ref-isbn)
;; (require 'org-ref-latex)
;; (require 'org-ref-scopus)
;; (require 'org-ref-pkg)
;; (require 'org-ref-scifinder)
;; (require 'org-ref-sci-id)
;; (require 'org-ref-url-utils)
;; (require 'org-ref-wos)
;; (require 'x2bib)
;; (require 'doi-utils)
;; (require 'org-ref-arxiv)

I have commented out the section below Org-ref as it throws a ''do not
call error'' on loading Emacs.

I am a Emacs newbie and would appreciate any help!

Thank you for the extremely useful package.

—
Reply to this email directly or view it on GitHub
#58 (comment).

—
Reply to this email directly or view it on GitHub
#58 (comment).

[jkitchin]

Prakash Nayak writes:

The bibtex buffer does not process the doi paste. It throws a wrong
argument error. (may be because I have commented out doi-utils?)

It is hard to say with so little information.

Also, is there a way to link existing pdfs to their bibtex entries? The
open pdf link in helm seems to work only when a pdf is dropped into the
bibtex buffer.

it will only work when the pdf has the name of the bibtex key and is in
the pdf directory. there are some possibilities to change how the pdf
is looked up.
see https://github.com/jkitchin/org-ref/blob/master/org-ref.el#L175.

Thank you again.

Prakash Nayak
On 8 Feb 2016 16:18, "John Kitchin" [email protected] wrote:

I think the issue is (require 'org-ref-autoloads), which usually should not
be required. Also (require 'org-ref-pkg) should not be required. everything
else should be fine.

What doesn't work?

John

---

Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

On Mon, Feb 8, 2016 at 3:06 PM, Prakash Nayak [email protected]
wrote:

The doi Utils and pdf auto citations don't work well on Windows install
of
Emacs 24.5.
Must one add the follwing to .emacs file?

(require 'org-ref)
;; (require 'org-ref-pdf)
;; (require 'org-ref-autoloads)
;; (require 'org-ref-bibtex)
;; (require 'org-ref-pubmed)
;; (require 'org-ref-glossary)
;; (require 'org-ref-isbn)
;; (require 'org-ref-latex)
;; (require 'org-ref-scopus)
;; (require 'org-ref-pkg)
;; (require 'org-ref-scifinder)
;; (require 'org-ref-sci-id)
;; (require 'org-ref-url-utils)
;; (require 'org-ref-wos)
;; (require 'x2bib)
;; (require 'doi-utils)
;; (require 'org-ref-arxiv)

I have commented out the section below Org-ref as it throws a ''do not
call error'' on loading Emacs.

I am a Emacs newbie and would appreciate any help!

Thank you for the extremely useful package.

—
Reply to this email directly or view it on GitHub
#58 (comment).

—
Reply to this email directly or view it on GitHub
#58 (comment).

---

Reply to this email directly or view it on GitHub:
#58 (comment)

Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

[nayakprakash]

On Mon, Feb 8, 2016 at 6:54 PM, John Kitchin [email protected]
wrote:

It is hard to say with so little information.

​Thank you so much , I shall revert with accurate info after .emacs update
on DOI .
The pdf links now work well! Thank you so much.​

Prakash Nayak

[nayakprakash]

helm-bibtex-get-entry1: Search failed: "^@([^])[[:space:]][({][[:space:]]_nguyen11:radiat_expos_from_imagin_tests[[:space:]],"

This is the error in I get in the message buffer with M-x doi-add-entry
(10.1586%2Ferc.10.184 is the doi used for the entry). It fails to add the
bibtex. I have no idea what this means and how I can avoid it.

Sorry for the bother.

Prakash Nayak

On Mon, Feb 8, 2016 at 6:54 PM, John Kitchin [email protected]
wrote:

Prakash Nayak writes:

The bibtex buffer does not process the doi paste. It throws a wrong
argument error. (may be because I have commented out doi-utils?)

It is hard to say with so little information.

Also, is there a way to link existing pdfs to their bibtex entries? The
open pdf link in helm seems to work only when a pdf is dropped into the
bibtex buffer.

it will only work when the pdf has the name of the bibtex key and is in
the pdf directory. there are some possibilities to change how the pdf
is looked up.
see https://github.com/jkitchin/org-ref/blob/master/org-ref.el#L175.

Thank you again.

Prakash Nayak
On 8 Feb 2016 16:18, "John Kitchin" [email protected] wrote:

I think the issue is (require 'org-ref-autoloads), which usually should
not
be required. Also (require 'org-ref-pkg) should not be required.
everything
else should be fine.

What doesn't work?

John

---

Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

On Mon, Feb 8, 2016 at 3:06 PM, Prakash Nayak <[email protected]

wrote:

The doi Utils and pdf auto citations don't work well on Windows
install
of
Emacs 24.5.
Must one add the follwing to .emacs file?

(require 'org-ref)
;; (require 'org-ref-pdf)
;; (require 'org-ref-autoloads)
;; (require 'org-ref-bibtex)
;; (require 'org-ref-pubmed)
;; (require 'org-ref-glossary)
;; (require 'org-ref-isbn)
;; (require 'org-ref-latex)
;; (require 'org-ref-scopus)
;; (require 'org-ref-pkg)
;; (require 'org-ref-scifinder)
;; (require 'org-ref-sci-id)
;; (require 'org-ref-url-utils)
;; (require 'org-ref-wos)
;; (require 'x2bib)
;; (require 'doi-utils)
;; (require 'org-ref-arxiv)

I have commented out the section below Org-ref as it throws a ''do not
call error'' on loading Emacs.

I am a Emacs newbie and would appreciate any help!

Thank you for the extremely useful package.

—
Reply to this email directly or view it on GitHub
<#58 (comment)
.

—
Reply to this email directly or view it on GitHub
#58 (comment).

---

Reply to this email directly or view it on GitHub:
#58 (comment)

Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu

—
Reply to this email directly or view it on GitHub
#58 (comment).

[jkitchin]

I am not sure what could be causing this. It looks like an error in helm-bibtex. Are you still seeing it?