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Joshua Ladau's Projects

biomio icon biomio

Lightweight, portable library for working with HDF5 BIOM files using Java.

codl icon codl

Code for running Census of Deep Life (CoDL) analyses

covid19fungi icon covid19fungi

Code to assess the association between fungal exposures and COVID-19 severity.

covid19fungisupplementarytables icon covid19fungisupplementarytables

Supplementary data tables to accompany the manuscript "The impact of environmental mycobiomes on geographic variation in COVID-19 mortality."

emp_nested icon emp_nested

A repository of code and data to investigate patterns of nestedness in the Earth Microbiome Project dataset

javasource icon javasource

Java source code and unit tests for all projects.

nestedness icon nestedness

Software for performing nestedness analyses on microbial communities.

nestedness.emp icon nestedness.emp

Software for performing Earth Microbiome Project nestedness analyses.

spatialautocorrelation icon spatialautocorrelation

Software for assessing whether microbial taxa, genes, and traits have structured spatial distributions.

speciesdistributionmodeling icon speciesdistributionmodeling

Software for mapping the geographic distributions of microbial taxa, genes, and traits using ecological niche modeling.

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