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šŸ‘‹ Hi, Iā€™m Jyoti Lama

  • šŸŒ± Iā€™m interested in utilizing new bioinformatic tools and models for visualizing and analyzing genomic data
  • šŸŒ± I mainly work with R, Python, and bash scripts
  • āš” During my PhD I worked with small/total RNA-seq and genomic datasets to determine the causative variants associated with host tolerance to Transposable elements in Drosophila
  • šŸ”­ During my postdoc I'm using GRO-seq, PRO-seq, leChRO-seq, ATAC-seq, and ChIP-seq datasets to understand transcriptional regulation in prophase I of mouse spermatogenesis

Jyoti Lama's Projects

inphase-snp-from-qtl icon inphase-snp-from-qtl

Narrowing down single nucleotide polymorphisms that are in agreement /in-phase with the phenotypic groups from within the QTLs

lechroseq-groseq-proseqpipeline icon lechroseq-groseq-proseqpipeline

Analyzing leChRO-seq, GRO-seq, and PRO-seq data sets to obtain and compare their expressions (FPKM) and visualize through Manhattan Plots

pirna-cluster icon pirna-cluster

These are the script to determine piRNA cluster read counts mapped to a set of annotated piRNA clusters.

python icon python

All the scripts from python tutorial and practice tests

rtfbs_db icon rtfbs_db

Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.

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