jlingford Goto Github PK
Name: James Lingford
Type: User
Bio: Curious about protein structure and function
Location: Melbourne, Australia
Blog: jameslingford.com
Name: James Lingford
Type: User
Bio: Curious about protein structure and function
Location: Melbourne, Australia
Blog: jameslingford.com
A workflow to estimate activation free energy for a protein structure obtained from a coarse-grained simulation
Alignment viewer for linux terminal
Multiple sequence alignment visualizer
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
Open source code for AlphaFold.
Interactive lessons in bioinformatics.
Python framework for doing ancestral sequence reconstruction
Master the command line, in one page
pop gen tutes
Interactive Web Plotting with Bokeh in IPython notebook
A minimal book example using bookdown
A toolkit for building CG model of protein/ribosome and MD simulation protocols for protein co- and post-translational folding
course material
code for Data Science From Scratch book
Protein contacts prediction using deep learning models
My dot files and config settings
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Foldseek enables fast and sensitive comparisons of large structure sets.
data for the book 'foundations of statistics for data scientists with R and python'
A pipeline for constructing a list of genome sequences that are candidates for containing a user-specified gene cluster of interest. This pipeline utilizes Python scripts, NCBI E-utilities and the NCBI Identical Protein Groups database to convert the results of BLASTp searches (proteins) to the corresponding genome sequences. This pipeline was des
Scripts to generate simulations and plots used in blog posts on genetic and genealogical ancestry gcbias.org/category/genetic-genealogy/ . These scripts were written over a couple of afternoons and are by no means optimal ways of constructing these quantities. Hopefully they will be of use.
Protein Graph Library
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
Just another depository
Human genome resource and tutorials
A fast, clean, responsive Hugo theme.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.