Comments (2)
Hi @rfarouni I am afraid I cannot reproduce this. It might help to paste the contents of sessionInfo()
here and also to describe how you generated binary_matrix
. For example, do you get the same problem if you run:
set.seed(42)
sparse_matrix <- Matrix::rsparsematrix(nrow = 20, ncol = 20, density = 0.5)
sparse_matrix[sparse_matrix != 0] <- 1
umap(sparse_matrix, n_neighbors = 4, pca_center = FALSE)
The error message you are getting is not one I am familiar with, and suggests something pretty odd has happened with your system. If your packages are not all up to date, please try that.
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I am going to close this as not reproducible but please re-open if this is still a problem and there is more information
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