Comments (4)
@claytonjschneider Thanks for bringing this up and its a great point. This is a common use case and one that definitely needs better documentation. bidskit supports this, but I'm still not entirely happy with the way it responds to adding new subjects/sessions to the sourcedata folder. I'm working on the development branch right now and hoping to clean up the logic and robustness of new data handling before merging back to the master branch. Should have that finished shortly, after which I'll add a clear section to the documentation.
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Awesome! Thanks so much for getting back about this quickly @jmtyszka , this package has been thus far my favorite for working into BIDS format, for its simplicity and it being clear as it progresses. If there's anything I can contribute to this update, please let me know - I'll take a look at the development branch.
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I've merged the new dev branch which includes a WIP automatic protocol translator creator and more documentation on injecting newly acquired subject-level DICOM data into an existing BIDS dataset (https://github.com/jmtyszka/bidskit/blob/master/docs/Features.md). The trick is to use the --subject
argument to convert only the new subject(s). As always, use the Issues tab to raise bugs, feature requests, etc.
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Related Issues (20)
- JSON files for magnitude images HOT 1
- Uncompressed but gz extension HOT 1
- Illegal characters not stripped in BIDS filename key values with --auto HOT 1
- BIDS validation error for fieldmaps after conversion HOT 16
- default readme in BIDS dataset after conversion HOT 3
- Second pass error HOT 6
- 'SerDesc' key error HOT 4
- .bval and .bvec export depends on dwi filename HOT 2
- Second pass error : KeyError: 'ScanningSequence' HOT 3
- Read-the-Docs page is an empty stub
- Not anonymizing HOT 1
- Second pass issue HOT 1
- Error when using --no-sessions option and only one subject is converted HOT 2
- Question about data structuring prior to running BIDSKIT
- Acquisition suffix is duplicated when multiple runs HOT 5
- IntendedFor fields with incorrect slash when running in Windows
- Cannot debug bidskit
- Cannot convert Tilted CT Scan
- session flag
- Files are overwritten on the second pass HOT 1
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