jnalanko Goto Github PK
Name: Jarno N. Alanko
Type: User
Twitter: jnalanko
Jarno N. Alanko's Projects
algopruju
align
barcode-analyzer
bd_bwt_index
Bidirectional BWT text index for byte alphabets
bifrost
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
bioconda-recipes
Conda recipes for the bioconda channel.
bufboss
bufboss_experiments
bw4sa
Burrows-Wheeler transform for Sequence Analysis: a generic, practical, versatile library for implementing a variety of (bio)sequence analysis algorithms in succinct space.
bwtcluster
Space-efficient clustering of metagenomic reads using the bidirectional Burrows-Wheeler transform
cobs
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
compare_color_dumps
cosmo
Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
discordcleanupbot
duplicate_removal
dynamicdbg
Practical Dynamic de Bruijn Graphs
ggcat
Compacted and colored de Bruijn graph construction and querying
hu4rolls-2
hu4rolls-svelte
Heads Up Holdem WebSocket client with SvelteKit
instanssi2024
jseqio
jzipview
Ultra-simple and fast zipped JPEG viewer released under GPL
k_index
Work in progress: k-mer pseudoalignment
katka-proof-of-concept
kmc
A fork of KMC used in Themisto
kmer-lcs
kseqpp
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
lcss
libsais-driver
metagraph
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
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