Comments (1)
Straightforward bug to fix. Had to extend with method that recognizes phyloseq classes as the first argument instead of "formula" class. The expected behavior when input is NOT a formula is to perform the unconstrained correspondence analysis or principle components analysis
from phyloseq.
Related Issues (20)
- how to replace "unidentified" taxa as NA in phyloseq object HOT 2
- invalid archetype error for tax_glom
- How to mask seriation Complex heat map HOT 2
- common otus with low coefficient of variation that are observed in at least once in more than 2 sites
- How to tabulate most abundant ASVs by treatment
- How I can plot relative abundance by sampling site instead of by sample ID? HOT 9
- Filtering reads and OUTs of low abundance
- Software Compatibility Issue Between phyloseq and lme4 Packages HOT 4
- tax_glom, invalid archetype provided HOT 1
- Tax_glom error after transform_sample_counts
- Give same ASV names between 3 datasets
- estimate_richness fails -- Component taxa/OTU names do not match. HOT 2
- duplicate sample with different variable value
- Import qiime2 table.qza error-reg
- filter_taxa after tax_glom
- Thanks Michelle, it makes sense now. I'll keep that in mind next time I label. HOT 1
- How to merge the same data for analysis? HOT 1
- customize facet colors in ggplot/ phyloseq object HOT 1
- Summary of the Advisory Opinion of 16 October 1975 | INTERNATIONAL COURT OF JUSTICE
- phyloseq_filter_prevalence, non-zero dimension
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from phyloseq.