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johnlonginotto's Projects

acgtrie icon acgtrie

A custom Numpy Trie for storing counts of sequences

deeptools icon deeptools

Tools to process and analyze deep sequencing data.

log.bio icon log.bio

Log command line events to a graph database :)

metaflagstat icon metaflagstat

Read count statistics for one or more sam/bam files in an easy to use/easy to understand format. Outputs HTML.

pybam icon pybam

Very simple, pure python, BAM file reader

seqc icon seqc

SQL databases from BAM/SAM files with a focus on QC.

uq icon uq

Encode FASTQ files to be much smaller, both compressed and uncompressed.

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