John Stout, Ph.D.'s Projects
Jupyter-lab toolbox to aid in calcium_imaging analysis/visualization using CaImAn and fastplotlib
A python toolbox to support analyses performed in the DECODE lab at Nemours Childrens Hospital in Wilmington DE, led by A.Hernan and R.Scott
Code used for processing and analyzing data from Amy Griffins laboratory at the University of Delaware
Lab code that supports conversion of various kinds of data to NWB. Currently under development
Code in this folder is for working with an automated maze
This code was written to interface with the maze engineers hardware and control an automated T-maze
Basic MATLAB code to perform rereferencing
Tutorials for learning NWB
A collection of code organized by projects
Code used by John Stout to interface with and analyze data in Timothy Spellmans lab
Code to convert .raw files using memory efficient techniques
A Python-based module for creating flexible and robust spike sorting pipelines.
suite2p with fastplotlib visualizations
A collection of code for the purposes of delivering talks and trainings
Code repository for Think Bayes.
HTML code from Jon Barron