Comments (2)
jjuhyunkim
commented on August 23, 2024
I encountered the same error when using the latest version of VG tools(version v1.53.0 "Valmontone"), which includes an upgrade for considering twice-projected transcripts on cyclic haplotypes.
Could you please address this error?
Random number generator seed: 1703019005
Loaded graph, GBWT and r-index (6.00261 seconds, 2.44436 GB)
Found alignment paths (1262.62 seconds, 2.44436 GB)
Clustered alignment paths (0.101424 seconds, 2.44436 GB)
rpvg: /home/rpvg/src/path_abundance_estimator.cpp:715: void NestedPathAbundanceEstimator::inferPathSubsetAbundance(PathClusterEstimates*, const std::vector<ReadPathProbabilities>&, std::mt19937*, const spp::sparse_hash_map<std::vector<unsigned int>, double>&) const: Assertion `path_group.second.size() <= group_size' failed.```
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jjuhyunkim
commented on August 23, 2024
I realized that it occurred due to the misuse of alignment types (paired short read vs single long read). I apologize for any confusion caused.
I am going to close this issue.
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Related Issues (20)
- gtf error HOT 1
- Software for differential expression analysis from rpvg's readcount HOT 3
- Model for rpvg's output HOT 40
- build rpvg failed HOT 1
- make static version? HOT 2
- Assertion `hasNodeId(node_id)' failed HOT 20
- Could not install the rpvg in Linux HOT 2
- How to prepare the gtf? HOT 7
- Unable to obtain GWBT HOT 13
- Failed to read BGZF block data at offset 4088217654 expected 4336 bytes; hread returned 1914 HOT 2
- Problems on pan-transcriptome index HOT 3
- Too much time consumed in quantification HOT 8
- 'std::bad_alloc' error in rpvg HOT 3
- Unable to run rpvg analyses without error HOT 2
- Can't run rpvg successfully HOT 5
- Meaning of input and output files of pantranscriptome HOT 5
- Haplotype transcript length inconsistent with GTF HOT 3
- Haplotype probability and read count HOT 2
- HST assignment : rpvg assigned two different homo HST instead of expected heterozygous transcripts.
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