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alphafold

Open source code for AlphaFold.

bika-lims

Web-based Laboratory Information Management System

celltypist

A tool for semi-automatic cell type annotation

fiji

Fiji Is Just ImageJ

image-tiff

TIFF decoding and encoding library in pure Rust

imagej

ImageJ2: the next-generation version of ImageJ

imagej-updater

The automatic updater for ImageJ

imagej1

A mirror of Wayne Rasband's imagej.git repository on fiji.sc, updated once a night

jpegxr

Rust wrapper for Microsoft's C JPEG XR codec library

kubed

Kubernetes with Dataporten Support tools e.g. kubectl config

libczi

Open Source Cross-Platform C++ library to read CZI image files

libvips

A fast image processing library with low memory needs.

lucky-commit

Customize your git commit hashes!

methylkit

R package for DNA methylation analysis

nip2

A spreadsheet-like GUI for libvips.

openseadragon

An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.

openseadragonimaginghelper

openslide-python

Thresholding and navigational function implementation on top of Openslide Deepzoom example

pydev

Python IDE for Eclipse

scijava-common

Configuration files and scripts common to the SciJava software stack.

shatrip

Sha256 incremental hasher/verifier

spatalk

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

svg-overlay

An OpenSeadragon plugin that adds SVG overlay capability.

vipsml

Vips frameworks for Machine Learning