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bioconda-recipes

Conda recipes for the bioconda channel.

configs

Config files used to define parameters specific to compute environments at different Institutions

dummypipe

ecv-baitcheck

joon-klaps

kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

labfilechecker

lasvphylo

An nextflow pipeline for making LASV alignments

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-package-containers

Testing building mulled containers for multi-requirement tools.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nextclade_data

Datasets for https://github.com/nextstrain/nextclade

nextcloud_share_url_downloader

Download files from and list content of NextCloud (password protected) share directly from the command line without needing a webbrowser.

nextflow_sandbox

A playground to explore how to implement things in Nextflow and nf-core

phageannotator

Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.

suppl_bacteroides_fragilis

Supplementary information with the article 'Large-scale genomic characterisation of Bacteroides fragilis reveals multiple functionally divergent lineages and a distinct species.'

tools

Python package with helper tools for the nf-core community.

viralgenie

Detect iSNV and construct whole viral genomes from metagenomic samples

viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

website-nf-core

Code and files for the main nf-core website.