using script on custom database about assign-taxonomy-with-blast

[PandengWang]

Hi, I encountered the same problem.
The solution is as follows:

taxonomy_categories = ['superkingdom', 'subkingdom', 'sub_subkingdom', 'kingdom', 'tmp1', 'tmp2', 'phylum', 'class', 'family', 'genus', 'species', 'tmp3', 'tmp4','tmp5', 'tmp6']
uncultured_cutoff_level = len(taxonomy_categories)
species_level = 14
family_level = 10
phylum_level = 7
taxonomy_to_grab = [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14]

Above codes should be changed according to you taxonomy file

taxonomy_categories = ['kingdom', 'phylum', 'class', 'order', 'family', 'genus', 'species']
uncultured_cutoff_level = len(taxonomy_categories)
species_level = 6
family_level = 5
phylum_level = 1
taxonomy_to_grab = [0,1,2,3,4,5,6]

Long time has passed. Hope this comment is still useful for you.