Comments (1)
Yes- 13 is a default offset that is used when there are not enough reads available to estimate from the data. You can adjust this via a CLI argument called --default
to the p-site script.
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Related Issues (20)
- Generated .bed file has "0" score in the 3rd line - When generating .bedgraph out of this .bed, no coverage of Ribo-seq data. HOT 2
- Support Python 3.8 HOT 1
- Remove deprecated features
- Support CRAM files HOT 1
- Plotting a metagene plot for two different samples at the same time HOT 1
- Question on --gff_transcript_types and --mask_gff_transcript_types HOT 1
- RuntimeWarning HOT 1
- ‘phase_by_size’ command-line script problem with Numpy(1.18.1) HOT 1
- Undefined symbol caused by compilation error only under Python 2.7.17 (3.x, 2.7.15 are ok) HOT 3
- ModuleNotFoundError: No module named 'plastid.genomics.roitools' HOT 5
- logging dependency should be remove from setup.py when installing with Python3 HOT 1
- Error when converting GFF3 to GTF2 HOT 3
- Incompatible with BioPython 1.78+ HOT 2
- Roitools module error when running psite: "ValueError: too many values to unpack (expected 2)"
- the bam file choose HOT 1
- Problem install plastid 'no attribute 'PileupColumn' HOT 2
- installation problems HOT 2
- numpy 1.24.1 and plastid 0.6.1 appear to have an issue due to dropping of support for numpy.int by numpy. HOT 6
- Building wheel is failing in local install HOT 1
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