James Hawley's Projects
A curated list of bioinformatics bench-marking papers and resources.
brain connectivity toolbox for python
Various bioinformatics tools in one package
A suite of bioinformatics tools for interacting with high throughput sequencing (HTS) data, written entirely in Rust
Conda recipes for the bioconda channel.
Metric for comparisons of chromosome (TAD) segmentations.
Command line clipboard utility
Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
Accurate and flexible loops calling tool for 3D genomic data based on un-supervised clustering and permuted local background.
UWP design app for colour selection
Anaconda recipes for various packages
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
Docker image for PyRosetta
Some data to use with dryhic package
Thoughts on comparing genomic intervals across a set of samples
Combination matrix axis for 'ggplot2' to create 'UpSet' plots
A collection of useful .gitignore templates
Quick access to your Zotero references from the system tray
A CLI/TUI for Homebank
Fork of Hi-C User Pipeline (HiCUP) https://www.bioinformatics.babraham.ac.uk/projects/hicup/
Fast large scale matrix visualization for the web.
Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
Python interval and interval set implementation. This is my copy of the `interval` package on PyPI https://pypi.org/project/interval/
ggplot2 theming functions
A Tidy R Code Style
A CLI tool to find all links in Markdown files and check that they exist.
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent