jstjohn Goto Github PK
Name: John St. John
Type: User
Company: @NVIDIA
Location: Santa Clara, CA
Name: John St. John
Type: User
Company: @NVIDIA
Location: Santa Clara, CA
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
Amazon Employee Access Challenge
A Variant Caller, Distributed. Apache 2 licensed.
Notebooks related to Bayesian methods for machine learning
High-definition reconstruction of clonal composition from next-generation sequencing data
Miscalanious C and C++ scripts.
cutadapt removes adapter sequences from sequencing reads
Free in-browser coding-dojo, running live at
deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
A TensorFlow implementation of the Differentiable Neural Computer.
A TensorFlow implementation of DeepMind's Differential Neural Computers (DNC)
Install and set up Docker
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
Automatically exported from code.google.com/p/flickribbon
Automatically exported from code.google.com/p/fonolo4android
Automatically exported from code.google.com/p/fonolo4android-lite
Code, exercises, answers, and hints to go along with the book "Functional Programming in Scala"
GATK Official Release Repository
Automatically exported from code.google.com/p/genefamilyfinder
ggplot for python
An R/Rcpp/RcppArmadillo implementation of Deng Cai's Non-negative Matrix Factorization on Manifold, sometimes called GNMF or GrNMF.
The missing package manager for OS X.
Work on Introduction to Statistical Learning
Fork of the jellyfish kmer counter. Here is the description copied from their site: JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish stats" command. See the documentation below for more details.
Subset of the kent source libraries (perhaps out of date) that are easily built and installed on OSX and Linux. These libraries provide usefull utilities for bioinformatics programming in C. This may contain some of my own libraries for bioinformatics utilities as well as long as they install easily on both my mac and linux box.
A fork of http://www.arduinoandkinectprojects.com/kinectorbit with an attempt at upgrading to Processing v2.
High-Resolution Image Synthesis with Latent Diffusion Models
Ongoing research training transformer models at scale
MIA is an reference guided assembler for DNA reads as generated by recent sequencing technologies. It is designed to support unusual short reads like they come from ancient, fragmented DNA.
NeMo: a framework for generative AI
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.