jtrew89 Goto Github PK
Type: User
Bio: Bioinformatician working on pathogen genomics
jtrew89's Projects
bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
calc_kivy_learning
contribute-to-this-project
This project is waiting for your contribution. If you have never contributed code on GitHub before, this is the project to get you started.
drought-tolerance-in-palm
Scripts used to identify drought resistant and tolerant trees, based on year on year production data after drought
enterocytozoon-hepatopenaei-biogeography-project
Code used for biogeographic study of whole genome Isolate data for E. hepatopenaei from China and Thailand
enterocytozoonidae-diversity-project
Sequence data for enterocytozoonid diversity project
fish-pathogen-project
Code used to identify fish pathogens from Kraken 2 analysis
git_push_pull
Script used to push or pull repos
jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
sequence_conversion_tools
srst2
Script to run srst2
staramr
Scripts associated with running starAMR
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