julesjacobsen Goto Github PK

billion-row-challenge

Code experiments related to 1brc

biohackathon-projects-2021

For BioHackathon Europe 2021.

curatormodel

A journal-centric model of UniProt for linking journal-derived data to protein sequences.

curie-util

Java utility library to translate CURIEs to IRIs and vice-versa.

emo

The Enzyme Mechanism Ontology

envoy

Cloud-native high-performance edge/middle/service proxy

exomiser-test-nf

exomiser_allele_store

Experimental project for parsing and sorting large numbers of alleles.

gregor

A refactor of Jannovar's mendel and pedigree packages

hello-iris

jannovar

Annotation of VCF variants with functional impact and from databases (executable+library)

linkml-java-model

A Java implementation of the LinkML model

matcher

miabis

mybiocaddie

Template for generating your own mycaddie metadata repo

nextflow-test

normalise-allele

A standalone library for minimising alleles to VCF standard

obographs

Basic and Advanced OBO Graphs: specification and reference implementation

owlsim-v3

Ontology Based Profile Matching

pedigree

Repository for the family history/pedigree project

phenodigm2

A Java library for accessing PhenoDigm data

phenogenomics

phenogrid

The phenogrid widget

phenopacket-reference-implementation

Reference java implementation for phenopackets

phenopacket-tools

Multimodule Java library/app that implements the "streamlined builder" code, v1 to v2 converter app

ristretto

Compressed Sparse Row (CSR) graph implementation for Ontologies

smhasher

Automatically exported from code.google.com/p/smhasher

spring-jms-demo

The Spring Boot JMS demo project

spring-petclinic

A sample Spring-based application

variantkey

Numerical Encoding for Human Genetic Variants