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argpass

binary-hamming-dist

NA-agnostic pairwise Hamming distance of binary data

bioconda-recipes

Conda recipes for the bioconda channel.

coreutils

Cross-platform Rust rewrite of the GNU coreutils

genomics-course-docker

genomics-course-docker-gui-apps

git

Git Source Code Mirror - This is a publish-only repository but pull requests can be turned into patches to the mailing list via GitGitGadget (https://gitgitgadget.github.io/). Please follow Documentation/SubmittingPatches procedure for any of your improvements.

heartage

NHSC Heart age tool

hhs

Hungry-Hungry SNPos

mtb-cnn

CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pingouin

Statistical package in Python based on Pandas

pof

Probability of Failure for metabolic networks

polars

Fast multi-threaded, hybrid-out-of-core query engine focussing on DataFrame front-ends

pv-feedstock

A conda-smithy repository for pv.

pyseer

SEER, reimplemented in python 🐍🔮

qmplot

A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.

scikit-learn

scikit-learn: machine learning in Python

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

tb-amr-cnn

Convolutional Neural Network to predict antibiotic resistance from M. tuberculosis sequence data; inspired by https://github.com/aggreen/MTB-CNN with the main difference of being independent of input dimensions; implemented in TensorFlow

tb-ml-containers

Docker containers for use in https://github.com/jodyphelan/tb-ml

tbhgvs

vcf-toy-data

minimal VCF toy dataset

who2tbp

A script to convert WHO MTB resistant variants to a format that can be ingested by TBProfiler

xxh-plugin-prerun-core

xxh wrappers for core tools: xxh-sudo, xxh-screen