Comments (3)
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Please check wether you can run /DIRECTION/sprint-0.1.7/sprint from command line.
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You can download it from: https://github.com/jumphone/SPRINT/blob/master/sprint_from_bam.py
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Thanks for your fast answer! :)
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I moved to the directory of the main sprint folder ("sprint-0.1.7"), established the python 2.7.8 environment and tried to run the "sprint prepare" command. Didn´t work ("-bash: sprint: command not found")! So probably something with my configuration wrong? Everything seemed fine when I followed the installation instructions.
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Great, I will do that, thank you!
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You can download the github release: https://github.com/jumphone/SPRINT/releases;
Then, uncompress the file and move into the folder;
Finally, you can use "python run.py prepare" and "python run.py main" to use sprint
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Related Issues (20)
- # HOT 19
- How to set the parameter -ss for non-strand-specific RNA-seq? Thank you. HOT 2
- Is the trimming first 6 bases step included in your pipeline? HOT 2
- Why the rate of A-to-G deteced by SPRINT is very low ? HOT 3
- Generated binary files not working HOT 6
- zz2sam.py hard-codes strandedness HOT 5
- how to calculate the no. of editing sites present in 3' UTRs and CDS and 5'TRS??? HOT 3
- Effect of editing sites on the condon changes HOT 3
- SPRINT installation Error HOT 7
- Differential RNA Editing HOT 3
- Error during run HOT 6
- No output after execution HOT 4
- import error HOT 3
- reverse strandedness -ss 1 or -ss 2 HOT 4
- No results in final result files HOT 2
- calculation time HOT 1
- What ref .fa file to use for sprint main after prepare? HOT 1
- Main command causing issue with getA2I.py HOT 8
- Some editing sites can not be identified but it has editing reads when viewing with IGV. HOT 3
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