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Name: Jianxiang Shi
Type: User
Name: Jianxiang Shi
Type: User
2019 Genomics Epidemiology Workshop at Academia Sinica
A visualization software for antibody multi sequence alignment
AbLang: A language model for antibodies
Tool for modelling the CDRs of antibodies
Auto in silico Consensus Inverse Docking(ACID) is a web server mainly for drug repurposing based on the consensus inverse docking method, which is designed to evaluate the binding affinities between each protein and the given small molecule. ACID is open to the public and shows great potential.
AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
A curated list of resources for using LLMs to develop more competitive grant applications.
Ancestry and Kinship Tools
ALEA: a toolbox for allele-specific epigenomics analysis
Open source code for AlphaFold.
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
Antibody Numbering and Antigen Receptor ClassIfication
Antibody-specific masked language model
Antibody affinity modeling
Modeling antibody design based on antibody and antigen information. Will also look at other existing methods for modeling antibodies.
Improved antibody structure-based design using inverse folding
ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of antibodies from their three-dimensional structure.
Reproducing all analyses and figures for the ASAP-seq paper
ASCAT copy number R package
IBM Aspera CLI
Basic workflow for ATAC-seq analysis
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Pipeline components for real-time phylodynamic analysis
An automatic classification tool for PVS1 interpretation of null variants
Links to ATAC-seq analysis tools
List of software/websites/databases/other stuff for genome engineering
A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.