Comments (1)
Hii,
sorry to write here, I wrote to their repo owner two days ago but have not received a response yet
But if you still have the refreshed memories of this topic, do you think strand is properly taken care of in the following snippet from PSI (that you linked above)
int exonst = genest + boost::lexical_cast<int>(subst[i]); int exoned = exonst + boost::lexical_cast<int>(sublen[i]);
should not the exonst and exoned assignments change depending on the strand. For negative strands, shouldnt it be genest - subst[i]
Could you please take some time to respond?
Thank you.
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Related Issues (10)
- Release statically compiled binary HOT 2
- Segmentation fault on example data HOT 5
- lib64/libstdc++.so.6 error when testing example data HOT 1
- "freePSI build -g" is not suitable for genomes with fragmented assembly
- exon bed file HOT 2
- ~95% of the kmer from RNA-seq data failed to match the theoretical kmer profile HOT 1
- Segmentation fault (core dumped) HOT 3
- Error when running shell script run_FreePSI.sh on macOS HOT 1
- interpretation of PSI values
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