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About Me

  🧠  Developing scalable software infrastructure to support brain research
  🏫  PhD in Medical Biophysics at University of Western Ontario
  👨‍🎓  BEng in Electrical & Biomedical Engineering at McMaster University

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Jason Kai's Projects

actions icon actions

Centralized repo of reusable GH actions

afids-cnn icon afids-cnn

Automatic localization and identification of salient brain landmarks

afids-utils icon afids-utils

Utility functions for working with AFIDs data / workflows

bids2table icon bids2table

Efficiently index large-scale BIDS neuroimaging datasets and derivatives

bidsapp-helper icon bidsapp-helper

Small python-helper package to simplify initialization of BIDS app CLIs with common arguments

cerebro_viewer icon cerebro_viewer

A pythonic 3D viewer to visualize and plot brains and neuroimaging data

datalad-osf icon datalad-osf

Utility scripts to facilitate use of Datalad with OSF

dataprobe3d icon dataprobe3d

Slicer project week Western - data probe for the 3D viewer

hippunfold icon hippunfold

BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

hippunfold_deps icon hippunfold_deps

Dependencies container for hippocampal_autotop (niftynet, minified fsl/ants, c3d, mcr)

jubids icon jubids

pyBIDS, but in Julia (for learning purposes)

logos icon logos

Repo to store logos for acknowledgements/affiliations

mriqc icon mriqc

Automated Quality Control and visual reports for Quality Assesment of structural (T1w, T2w) and functional MRI of the brain

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