katarinastuart Goto Github PK

at1_mynagenome

constructing_a_manuscript

How to work through a project without getting overwhelmed by new topics and data analyses

databases_landscapegenomics

envcomputing_rda

Ecology and Multivariate Statistics Redundancy Analysis (RDA)

ev1_selectionmetaanalysis

Vignette and research project developed under the AES ERC Networking Grant Scheme and the GSA workshop support scheme.

katarinastuart.github.io

myfirstpipeline

rm1_rmarinaphenotypicvariance

sturnusvulgaris_research

sv0_generalpopgen

Some early SNP variant calling and popgen scripts.

sv1_starlinggbs

Scripts and notes related to the manuscript: Stuart KC & Cardilini APA 2021 Signatures of selection in a recent invasion reveal adaptive divergence in a highly vagile invasive species. Molecular Ecology 30(6):1419-1434, doi.org/10.1111/mec.15601 † joint first author ‡ joint last author.

sv2_starlinglitreview

Scripts and notes related to the manuscript: Stuart KC & Hofmeister NR et al. 2022 Global invasion history and native decline of the common starling, Under Review

sv3_starlinggenome

Scripts and notes related to the manuscript: Stuart KC & Edwards RJ et al. 2022. Transcript- and annotation-guided genome assembly of the European starling. Molecular Ecology Resources, doi.org/10.1101/2021.04.07.438753. † joint first author

sv4_historicalstarlings

Scripts and notes related to the manuscript: Stuart KC et al. 2022. Historical museum samples enable the examination of divergent and parallel evolution during invasion. Molecular Ecology, 31(1): 1836-1852, doi.org/10.1111/mec.16353

sv5_starlingwgs

Scripts and notes related to the manuscript: Stuart KC, Edwards, RJ, Sherwin WB, Rollins, LA. 2022 Contrasting patterns of single nucleotide polymorphisms and structural variations across multiple invasions. Molecular Biology and Evolution, 40(3): msad046. https://doi.org/10.1093/molbev/msad046

sv6_starlingecogeographical

Scripts and notes related to the manuscript: Stuart KC et al. 2022. Genetics and Plasticity Are Responsible for Ecogeographical Patterns in a Recent Invasion. Frontiers in Genetics, 13: 824424, 10.3389/fgene.2022.824424