kcarbone Goto Github PK
Name: Kate Carbone
Type: User
Company: UC San Francisco
Name: Kate Carbone
Type: User
Company: UC San Francisco
Repository from software carpentry class
Core OMERO Scripts
ImageJ/FIJI macro for iterating through a directory of TIFs to measure and compare intensity values across channels in a manually defined ROI
Original method of controlling TIRF motor for scanning angle interference microscopy using beanshell script. This has since been replaced with a micromanager plugin at https://github.com/valelab/saimCalibration
Micromanager plugin for Scanning Angle Interference Microscopy (SAIM) and Arduino firmware for running laser calibration device explained in device_construction.pdf. Described in: Carbone, C. B., Vale, R. D., & Stuurman, N. (2016). An acquisition and analysis pipeline for scanning angle interference microscopy. Nat Meth, 13(11), 897–898.
A Fiji plugin for analysis of Scanning Angle Interference Microscopy data
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