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aali

Python script for checking the interactions between amino acids and ligands

abchemoinformatics

:ab: ABC of chemoinformatics

ad_finemap

Code supporting analyses in paper on fine-mapping AD loci

af2_conformations

A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2

algorithm

Some classic algorithmic topics

ampumi

Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)

autodock-vina

Protein-ligand docking code autodock vina from vina.scripps.edu

autokeras

Accessible AutoML for deep learning.

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

awesome_ai_aided_drug_design_papers

https://chenxingqiang.github.io/Awesome_AI_Aided_Drug_Design_Papers/

bamdst

a lightweight bam file depth statistical tool

bindkin

A structural benchmark to measure point mutations’ impact on kinase-ligand interactions

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics

cancervar

Clinical interpretation of somatic mutations in cancer

cgm-tools

A collection of Python tools to perform CGM (Continuous Glucose Monitoring) analysis and forecast

chembl_webresource_client

Official Python client for accessing ChEMBL API.

click

A collection of preprepared reactions for RDKit

clusfps

A Molecular cluster tools built on RDKit

clusterprofiler

:bar_chart: A universal enrichment tool for interpreting omics data

cmapm

Connectivity Map analysis in MATLAB

cmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

cns_mpo

Python code that takes a SDF file as input to calculate the central nervous system multiparameter optimization (CNS MPO) score

customprodbj

Customized protein database construction

deep-drug-response

deepbind

I have put my modified version of the deepbind code here.

deepbind-1

Training and testing of DeepBind models.

deepdrug3d

A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.

deeploc

This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content microscopy data with deep learning"

deepmind-alphafold-repl

https://moalquraishi.wordpress.com/2018/12/09/alphafold-casp13-what-just-happened/