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adversedrugevent

Mining FDA data for unknown adverse drug events

bio.jl

Bioinformatics and Computational Biology Infrastructure for Julia

biosys-bootcamp

brainstem

brainstem

bwt

String search using the Burrows-Wheeler transform

countingutility

A simple utility for creating ground truth for counting algorithms.

dkm

Contains code for DKM: Dense Kernelized Feature Matching for Geometry Estimation

drug_ingred

Get drug ingredients from RxNav

ember-cli-bootstrap-datepicker

Datepicker component for Ember CLI

fiftyone

The open-source tool for building high-quality datasets and computer vision models

gtk.jl

Julia interface to Gtk windowing toolkit.

hamilton

Hamilton helps data scientists and engineers define testable, modular, self-documenting dataflows, that encode lineage and metadata. Runs and scales everywhere python does.

idepi

IDentify EPItopes

ilastik

ilastik-shell, applets, and workflows to string them together.

lazyflow

lazy parallel ondemand zero copy numpy array data flows with caching and dirty propagation

lispy

A LISP interpreter in Python

motif_sampler

pacmap

PaCMAP: Large-scale Dimension Reduction Technique Preserving Both Global and Local Structure

pdbalign

phylotree.js

Interactive viewer of phylogenetic trees

rest_framework_ember

Currently adds Ember Data support to Django Rest Framework with the long term goal of being compliant with the jsonapi.org 1.0 specification.

ruffus

Ruffus is a lightweight python module for running computational pipelines.

sandman2

sandman2

scikit-image

Image Processing SciKit (Toolbox for SciPy)

scikit-learn

scikit-learn: machine learning in Python

sequtil

Various utilities for managing sequencing data

sklmrmr

MRMR implemented in Cython for scikit-learn

sysgenb

BNFO 285: DREAM 5 SysGen B

veg-hiv-env

A web app to display and interact with within-host longtitudinal HIV-1 env sequences based on JSONs generated offline

vigra

a generic C++ library for image analysis