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abcgo

Approximate Bayesian Computation library in Go

alignmentrs

Quickly read and manipulate multiple sequence alignments in Python

alignsim

Fast forward simulation to generate multiple sequence alignment data

alnjoin

Join two alignments based on a common sequence

alnrs

High performance biological sequence alignment and annotation library

anaconda-mpi

Docker container for developing in Python using Anaconda, Jupyter notebook and OpenMPI

bioconda-mpi

Docker container for developing bioinformatics applications in Python using Jupyter notebook

biodatatypes

Biological sequence datatypes

biography

A logger for normal people

bioinformatics_for_biologists

bioseq

Lightweight Python package for handling nucleotide, protein, and codon sequences

blockrs

Encode and decode alignment block data

ccsim

Cell competition simulator

cigar2aln

Converts CIGAR string of tartget and query sequences into a pairwise alignment

conspos

Computes the consensus alignment between global, local and sub-global multiple sequence alignments

contagion

Contagion: Simulating Viral Evolution in Epidemics using Networks

contagion-docs

Beautiful static documentation for your API

cuda-mamba

Nvidia CUDA base container with Mamba installed

d3js_tutorial

datascience_notebook_web3py

Jupyter datascience notebook + web3.py container

dhtsensor

Simplifies reading temperature and humidity data from a DHT11/22 sensor using pigpio

dnds

Counting methods for computing dN/dS between two sequences

docker-base-containers

Docker base containers

docker-conda

Dockerized Conda installation

docker-contagion

Docker container for epidemic modelling and forward-time simulations

docker-genomics

Dockerized bioinformatics software used in genome sequencing

docker-jupyter-cuda

Makefile to rebuild jupyter/*-notebook images using nvidia/cuda as the base container

docker-openmpi

Docker container for developing MPI applications

docker-scrapy-tor

Scrapy environment with Tor for anonymous ip routing and Privoxy for http proxy

docker-stacks

Ready-to-run Docker images containing Jupyter applications