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actions

Centralized repo of reusable GH actions

atlas_deepbrain7t

autobids

Automated Dicom to BIDS and pipelines using compute canada

autobids-globus

Automatically manage globus distribution of Autobids datasets

autobids-portal

beast

Adapt the BEaST skull stripping method for 7T MRI as a BIDS app

bids

bids-tutorial

Tutorial on BIDS - Methods Lunch Feb 12

bids-validator

Validator for the Brain Imaging Data Structure

billing-snakemake

cbs-server-billing

cc-interactive

This profile configures Snakemake for interactive jobs on Compute Canada (e.g. graham).

cc-slurm

This profile configures Snakemake to run on Compute Canada with SLURM (e.g. graham).

cctools

Tools for monitoring jobs etc on compute canada systems

cfmm-bids

Tools for dicom-server retrieval, tarballing and conversion to bids

cfmm2tar

Tools for dicom-server retrieval, tarballing and conversion to bids

continuous_max_flow_9.4t

core

cvpl_tools

A Python package for utilities and classes related to the file I/O, dataset record keeping for image processing and computer vision.

datalad

datalad-osf

Utility scripts to facilitate use of Datalad with OSF

dcmtk_pacs

deploy_transparent_singularity_to_cc_template

despot1

T1 mapping BIDS app

dicom2tar

Tool for gathering dicom files into organized tarballs, each containing unique study instance

dicom_anonymization

diffparc-deps

Dependencies for diffparc-app

diffparc-surf

Snakebids app for diffparc-surf, including dwi processing

distortion_pipeline

docker-dcm4che