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awesome-emacs

A community driven list of useful Emacs packages, libraries and others.

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

bioservices

Access to Biological Web Services from Python.

damona

singularity environment manager (application to NGS and bioinformatics)

demultiplex

Sequana demultiplexing pipeline

denovo

Denovo Assembly from FASTQ files

depletion

Deplete Fastq files from human or other content

divtrans

divtrans_azebi_2019

gnfish

Suite of Python programs for Gene extraction and Phylogentic Inference

isopy

junco_analysis

jupyterlite_test

mapper

Pipeline to map a set of FastQ files

massspec_parser

A python library to parse Mass Spectrometry results and annotate with TAIR accessions

mycotools

Library for Mycobacterium related bioinformatic tools

nanomerge

Pipeline utility to perform merge of barcoded nanopore runs

nbdev_test

of_demultiplexing_and_fastqc

repository for JOSS paper about sequana_fastqc and sequana_demultiplex pipelines

org-gcal.el

Org sync with Google Calendar. (active maintained project as of 2019-11-06)

papermill

📚 Parameterize, execute, and analyze notebooks

pygen

pynextgen

The evolution of pyGen with Python and R code for more advanced Bioinformatic and deep sequencing analysis

repnots

rnaseq

RNA-seq, QC and differential analysis pipeline

rnextgen

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

sequana

Sequana: a set of Snakemake NGS pipelines

sequana-wrappers

The Sequana Wrapper Repository is a collection of reusable wrappers used in Sequana Pipelines.

sequana_pipetools

A set of tools to help building or using sequana pipelines