Kibet's Projects
!!!STILL UNDER DEVELOPMENT!!! This is a workflow tutorial of analysis of 16S-rRNA based on the H3BioNet standard operating procedure. It is incomplete for now.
Conda recipes for the bioconda channel.
This a CO1 barcodes meta-analysis project repository. The project targets to conduct phylogenetic, biodiversity and phylogeographic analysis of CO1 barcodes sequences in BOLD systems from East African Arthropods
Material for the Advanced Bioinformatics Workshop Trieste 2019
This Repo hosts SARS-CoV-2 genome sequencing, variant calling and assembly scripts. It relies on other cloned repositories and singularity images adapted from other tools and workflows.
a signal-level demultiplexer for Oxford Nanopore reads
Metagenome assembly and annotation
Convert STACKS fasta to many genotype formats
The ARTIC field bioinformatics pipeline
Personal website
This is a step by step guide on how to install latest version of Installing Augustus 3.3.1 (with manual bamtools installation)
This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.
My jupyter notebooks
Jekyll-Uno - a minimal, responsive theme for Jekyll based on Uno for Ghost
Assembly and binning of metagenomes
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
This repository host code used in the analysis workflow of sequences generated from shotgun metagenomics sequencing.
Nextflow scripts for custom metagenomic workflows
Shotgun metagenome assembly and gene prediction
Workshop website page
Viral genome alignment, clade assignment, mutation calling, and quality checks
Page for Open Science in Bioinformatics Worskop on 9th and 10th August, 2018.
All information needed on creating bioinformatics pipleines and workflows
This is a ten hour course on Preprint usage in life or biomedical sciences. It has been created by ASAPbio 2020 fellows group with the support of ASAPbio.
Lecture resources for Python for Bioinformatics EANBiT course.
This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.
SARS-CoV-2 genomics surveillance work notebooks for data management and analysis.
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