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2019_material

Repository for labs/assignments from 2019

apmth10

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

atac-starr-seq

Scripts for analyzing ATAC-STARR data.

base-editor-screen-analysis

Analysis of screening data from base editor screens

be-validation-pipeline

Analysis pipeline for base editor validation experiments

beyondpractice

big_single_cell_rna_seq_workshop

repository for the single cell RNA-Seq workshop

bootcamp

Caltech Introduction to Programming for the Biological Science Bootcamp

bootcamp-scraping

Repository for the scraping bootcamp.

box_makeharvard

cas9-variants-manuscript

course-catalog

Turning Harvard's PDF course catalog into easily-digestible data.

crispr

Scripts for analysing CRISPR screens using MAGeCK

cs50-ai

cs50-beyond-database

cs50-final-project-free-stuff-exchange

data-science-tutorial

Introduction to data science using numpy, pandas, and matplotlib

datacamp

datasciencecourse

This holds iPython notebooks and lecture slides for the Intro to Data Science Master's course I teach at NYU.

datathon-bootcamps

All of the bootcamps that will be a part of the HODP Datathon

dnmt1_elife_2022

Code for DNMT1 paper

dsbook

Repository for data science book

dualgenomewide

All original code pertaining to the manuscript "Dual genome-wide coding and lncRNA screens in neural induction of induced pluripotent stem cells."

esm-variants

fastbook

The fastai book, published as Jupyter Notebooks

flight

free-stuff-exchange

CS50's Final Project (Fall 2018) - A forum for students on Harvard campus to exchange free merch they have

freecodecamp

The https://freeCodeCamp.org open source codebase and curriculum. Learn to code for free together with millions of people.

gears

GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations