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aplot

decorate a plot with associated information

aquiferecology

Contains the R-scripts utilized in the paper entitled "Microbial Community Cohesion Mediates Population Turnover in Geochemically Stable Aquifers"

biol4253

Principles of Ecology

biomonitor

A package for calculating indices for biomonitoring of running waters with a focus on macroinvertebrate community. Still in development.

clusterprofiler

:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters

colorado-diatom-mmi

Process and analyze diatom counts with national MMIs

dataeditr

An Interactive R Package for Viewing, Entering Filtering and Editing Data

diathor

:exclamation: This is a read-only mirror of the CRAN R package repository. diathor — Calculate Ecological Information and Diatom Based Indices Report bugs for this package: https://github.com/limnolab/DiaThor/issues

diatom_metacommunity_simulations

Supplementary material for "Evaluating Alternative Metacommunity Hypotheses for Diatoms in the McMurdo Dry Valleys Using Simulations and Remote Sensing Data"

diatomdiversitymethodscomparison

TomCSmith and mqwilber work on comparing multivariate, bivariate (SAD), and univariate methods of describing communities using Holmes' Sierra Nevada diatom data

diatommetricthreshold

TP

diatoms-biogeography-southamerica

Tropical South American Diatom Database

dncimper

R Package for PerSIMPER and DNCI analysis. Assembly process identification.

download

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ecocomdp

A dataset design pattern and R package for ecological community data.

facerecognition

基于TensorFlow的人脸识别卷积神经网络

factoextra

Extract and Visualize the Results of Multivariate Data Analyses

freshwater-typologies-diatoms

fungal-bacterial-network-construction-and-analysis

R code for analyses in the manuscript "Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches"

g2

📊 A highly interactive data-driven visualization grammar for statistical charts.

ggcor

Extended tools for correlation analysis and visualization.

ggforce

Accelerating ggplot2

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

koedooder-et-al.-2019

Diatom-bacteria interactions modulate the composition and productivity of benthic diatom biofilms

lcbd-diatoms

Ecological uniqueness of lake diatoms

linket

miceco

Various functions for analysis of microbial community data

microbiotaprocess

ncbitaxonomy.jl

Wrapper around the NCBI taxonomy files

neondivdata

Cleaned biodiversity data from NEON