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kingaa avatar kingaa commented on July 28, 2024

The question of "weighting" the data is equivalent to the question of what form the measurement model takes. The larger the variance of the measurement model, the smaller the weight that is associated with the data. In other words, if you don't believe that the low values in the data are precise measurements, this should be reflected in your measurement model as a large variance, which in turn will cause these data to be down-weighted in the likelihood calculation. If you do believe that the measurements are precise, then why would you want to ignore them?

So the first question is: Is the evident lack of fit a problem with the data or with the model (or both)?
In particular, what is the precision of the various measurements? Is this properly reflected in your measurement model?
If it is, then the next question is, Why is my model capable of fitting the low periods, or the high periods, but not both?

Also, may I ask why you are using such an out-of-date version of pomp?

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Spatial-R avatar Spatial-R commented on July 28, 2024

Thanks!I will try the newest version of pomp and reset the measurement model.

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kingaa avatar kingaa commented on July 28, 2024

I will close this issue for now. Feel free to re-open if more discussion is warranted.

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