Related Issues (20)
- indel support overview
- indel support: dataloader-utility:VcfReader
- indel support: predict_mutations_on_batch()
- Migrate all `kipoi.postprocessing.variant_effects` to `kipoi_veff` HOT 1
- allow `stdout` filename on score_variants
- Make a duplicate of variants.vcf when testing HOT 2
- Docs improvement
- update ModelInfoExtractor HOT 1
- Use HDF5BatchWriter instead of deepdish when writing the results for hdf5 files
- No error message if the input file doesn't exist HOT 1
- Error when chromosome names don't start with `chr` HOT 1
- Add logit_diff scoring function.
- Kipoi-veff fails silently when the input files don't exist HOT 2
- Speedup writing to file HOT 1
- dataloader_args HOT 2
- Results differ unexpectedly between `pipeline.predict` and `query_bed` with `ref` score HOT 6
- compatability issues with installation of deepsea HOT 1
- Getting a NotImplementedError: "sortBed" does not appear to be installed or on the path... error when running score_variants HOT 1
- How can I use the "ax=None" in the plot_mutmap function?
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