kjamison Goto Github PK

afipeak

MATLAB package for computing flip angles and suggesting reference voltages from Dual-TR B1 mapping acquisitions

afni

Mostly modifications to dicom_hdr and dicom_hinfo for usability

atlasblobs

bctpy

brain connectivity toolbox for python

brainmontageplot

colormap_matplotlib_matlab

matplotlib colormaps for matlab

connviewer

ctp-dicomoverlaypixelanonymizer

easy_lausanne

Easy creation of Lausanne2008 atlases

floc

Functional Localizer

fmriclean

fMRI denoising and parcellation

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

gears

Flywheel Gear Examples and Documentation

glmdenoise

gradunwarp

Gradient Unwarping in Python

graph_nets

Build Graph Nets in Tensorflow

hcpbatch

Flexible wrapper for HCP pipeline batch jobs

krakencoder

krakencoder_paper

Analysis and figure code for Krakencoder publication

mapping_sc_fc

motiontraining

Simple webcam-based motion tracking for training MRI subjects to keep their heads still

mriqc

No-reference image quality metrics for quality assessment of MRI

my-sensors

A simple Android SDK project which evaluates available sensors.

mysensors

Fork of Kevin Fodor's Android app (got mangled converting to Android Studio)

nemo

Network Modification Tool

nsdcode

Code related to analyzing the Natural Scenes Dataset

pet2bids

PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side file like .e.g excel sheets

pipelines

Local HCP pipeline fork with extra options and fixes I've needed to make to run at CMRR

pycortex

Pycortex is a python-based toolkit for surface visualization in fMRI data

qsiprep

Preprocessing and reconstruction of diffusion MRI