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Keith Jolley's Projects

aisource icon aisource

Repository for the paper "Machine learning to predict the source of campylobacteriosis using whole genome data"

bigsdb icon bigsdb

Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.

confindr icon confindr

Intra-species bacterial contamination detection

grapetree icon grapetree

GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata.

hicap icon hicap

👋🎓 in silico typing of the H. influenzae cap locus

klebsiella_reports icon klebsiella_reports

Configuration and templates for BIGSdb Reports plugin for Pasteur Klebsiella database

seq_scripts icon seq_scripts

Miscellaneous scripts for manipulating sequence data

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