Keith Jolley's Projects
Repository for the paper "Machine learning to predict the source of campylobacteriosis using whole genome data"
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
Experimental implementation using modern web framework
Installation, administration, curation and user guides for BIGSdb
Python libraries for interacting with local BIGSdb databases
Miscellaneous scripts for interacting with BIGSdb databases
Intra-species bacterial contamination detection
GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata.
👋🎓 in silico typing of the H. influenzae cap locus
Configuration and templates for BIGSdb Reports plugin for Pasteur Klebsiella database
Miscellaneous scripts
Miscellaneous scripts for manipulating sequence data