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bionitio-python

Demonstrating best practices for bioinformatics command line tools

bismark

See the main fork here:

clubcpg

Cluster-based analysis of CpG methylation

damefinder

Finds DAMEs - Differential Allelicly MEthylated regions

dl-ml-hybrid

gbs_medip

introduction-to-python

introduction to python

medip-seq

A set of scripts and functions for analyzing MeDIP-seq datasets

methget

Web-based bioinformatics software for correlating genome-wide DNA methylation and gene expression

methylartist

Tools for plotting methylation data in various ways

methylc-analyzer

methylkit

R package for DNA methylation analysis

methylr2py

Python wrapped R packages for methylation array analysis

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nextflow

A DSL for data-driven computational pipelines

nextflow-training

Development fork. See main repo here:

nf-core-methylseq

See the main fork of this repository here >>>

nf-core-rnaseq

See the main fork of this repository here >>>

phaser

phasing and Allele Specific Expression from RNA-seq

reheader

Generate beautiful header images for your GitHub profile READMEs.

sartools

Statistical Analysis of RNA-Seq Tools

tools

Python package with helper tools for the nf-core community.

trimgalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data