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catalyst

Cytometry dATa anALYsis Tools

compass

In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

csv-to-fcs

A short script for converting .csv file data into an .fcs file, and vise versa.

cyto-feature_engineering

Analyzing flow cytometry data with feature engineering

cytocluster

A package for clustering high-dimensional cytometry data in Python.

ikap

IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis

immunocluster

inflect

Repository for projects developed within the lab of JJ. Garcia-Vallejo

megaclust

unbiased hierarchical density based parallel clustering of large datasets

metaflux

radiant

R-based Analytical tool for DIfferential ANalysis of cyTometry data (RADIANT)

recon3d

A 3-Dimensional View of Human Metabolism and Disease

scfea

single cell Flux Estimation Analysis (scFEA) Try the below web server!

spade

SPADE: Spanning Tree Progression of Density Normalized Events

spadevizr

SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results.

spectral_flow_workflow

spectre

A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.

t-rex

vision

Signature Analysis and Visualization for Single-Cell RNA-seq